PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742282
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 214aa    MW: 24200.2 Da    PI: 9.87
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742282genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014769123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  676742282 47 YTCSFCRREFRSAQALGGHMNVH 69
               9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-64473No hitNo description
Gene3DG3DSA:3.30.160.608.9E-44572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2194774IPR007087Zinc finger, C2H2
PfamPF139121.3E-54770IPR007087Zinc finger, C2H2
SMARTSM003550.00614769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKRTHMASFS SRNKTQEEGD TNGHDQIIMN HYKNYEAGLI PWPPKNYTCS FCRREFRSAQ  60
ALGGHMNVHR RDRAKLRQIP SWLFEPHHQI PVRNSNPNPN FSSSSSSSTT LAHLKPSLTN  120
HISKTTPFSS SRLDLLDNTT SYGGVMVERE KKNQSNVCSR ELKNSAMDSC HAARSEISRG  180
DLTYKKDGAI GLDLGMDLRN PKQVLDLELR LGCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134269229superman protein
2l1o_A4e-134269229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBankAC1892200.0AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142836.11e-120PREDICTED: transcriptional regulator SUPERMAN
TrEMBLM4CKF71e-120M4CKF7_BRARP; Uncharacterized protein
STRINGBra004692.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-110zinc finger protein 11